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Enterprise AI Analysis: Systematization of Knowledge: Security and Safety in the Model Context Protocol Ecosystem

Securing the Future of AI: Systematization of Knowledge for MCP

A deep dive into the Model Context Protocol (MCP) ecosystem's unique security and safety challenges, and a roadmap for enterprise adoption.

The Model Context Protocol (MCP) marks a pivotal shift in AI, transforming LLMs from passive text processors into active system components. However, this advancement introduces novel risks at the intersection of cybersecurity and AI safety.

43% MCP Server Implementations with Unsafe Shell Calls
70,000 Adversarial Samples in MCP-AttackBench

Our analysis reveals a complex threat landscape, demanding a unified, defense-in-depth approach for secure AI integration.

Deep Analysis & Enterprise Applications

Select a topic to dive deeper, then explore the specific findings from the research, rebuilt as interactive, enterprise-focused modules.

Structural Vulnerabilities
Threat Landscape
Mitigation Strategies
Case Studies
3X Expanded Attack Surface

The architectural decoupling of context and execution in MCP significantly expands the attack surface of AI systems, transforming LLMs from passive text processors into active system components capable of executing actions based on potentially untrusted context.

Context Poisoning Attack Flow

Attacker Injects Malicious Tool Description
LLM Processes Malicious Context
LLM Issues Unauthorized Tool Call
Host Approval Check Fails (Despite checks)
Tool Execution Exfiltrates Data
Feature Traditional Protocols (e.g., REST/gRPC) MCP (Model Context Protocol)
Attack Surface Focus
  • Code-level flaws, API endpoints
  • Semantic context, tool descriptions, data flow
Security Controls
  • Authentication, input validation
  • Provenance, runtime intent verification, session isolation

Supabase Data Leak (2025)

A developer used an AI assistant (Claude via Cursor IDE) connected to a Supabase database through MCP. An attacker, posing as a normal user of a support ticket system, embedded a malicious instruction inside a support ticket message. This instruction was crafted to look like a message for the AI agent, telling it to leak the contents of a sensitive database table (integration_tokens). The support workflow was such that the human support agent never saw this hidden directive (it was just stored as data), and due to role-based access controls, the human agent couldn't access the sensitive table anyway. However, when the developer later asked the AI assistant to show the latest ticket, the AI pulled in the attacker's message as part of the context. The LLM confused data for a command – it dutifully executed the SQL queries as instructed, since it had the powerful service_role credentials, bypassing all security policies. The result: the secret tokens were extracted and inserted into the ticket conversation, immediately visible to the attacker in the user interface.

  • Isolation of Instructions vs Data: Systems must clearly delineate between executable instructions and just content. Sanitize tool descriptions and user-provided data.
  • Principle of Least Privilege: AI agents should operate with minimally scoped credentials (e.g., read-only) to limit damage.
  • Audit and Monitoring: Implement monitoring to flag unusual behavior (e.g., AI accessing sensitive tables) and output sanitizers to prevent data exfiltration.

Calculate Your AI Integration ROI

Estimate the potential time and cost savings from securely adopting Model Context Protocol in your enterprise.

Estimated Annual Savings $0
Annual Hours Reclaimed 0

Your Secure AI Adoption Roadmap

A phased approach to integrate MCP securely, moving from immediate visibility to long-term automated governance.

Phase 1: Visibility & Containment (Immediate)

Treat MCP servers as "shadow IT." Implement policy-based gateways, basic prompt filters (OWASP LLM01), and "human-in-the-loop" for all state-changing actions.

Phase 2: Zero Trust Architecture (Mid-Term)

Move from implicit trust to explicit verification. Implement ETDI for tool signatures and immutable versioning. Deploy Identity-Aware Proxies to bind every MCP request to a specific user identity.

Phase 3: Automated Governance (Long-Term)

Implement "Governance-as-Code." Enforce data sovereignty policies using sidecar monitors. Integrate "Watchdog Agents" for automated circuit breakers.

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